STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1250KEGG: fre:Franean1_2829 hypothetical protein. (281 aa)    
Predicted Functional Partners:
Psed_1249
KEGG: fre:Franean1_2830 hypothetical protein.
       0.791
Psed_1248
KEGG: fre:Franean1_2831 hypothetical protein.
       0.773
Psed_1251
KEGG: fre:Franean1_2828 hypothetical protein.
       0.773
Psed_1252
PFAM: Inositol monophosphatase; KEGG: kfl:Kfla_6457 inositol monophosphatase.
       0.773
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.773
Psed_1246
KEGG: fre:Franean1_2833 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase.
       0.684
Psed_1247
PFAM: Haloacid dehalogenase-like hydrolase; KEGG: fre:Franean1_2832 HAD family hydrolase.
       0.675
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.