STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1617PFAM: Peroxiredoxin, OsmC-like protein; KEGG: gct:GC56T3_1846 OsmC family protein. (158 aa)    
Predicted Functional Partners:
Psed_1620
KEGG: nca:Noca_4838 hypothetical protein.
 
     0.704
Psed_2516
PFAM: Peroxiredoxin, OsmC-like protein; KEGG: nfa:nfa53120 hypothetical protein.
  
     0.633
Psed_2871
PFAM: Peroxiredoxin, OsmC-like protein; KEGG: rha:RHA1_ro05070 hypothetical protein.
  
     0.632
Psed_1623
TIGRFAM: Argininosuccinate lyase; KEGG: nca:Noca_4820 argininosuccinate lyase; PFAM: Lyase 1, N-terminal; Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.
 
     0.594
Psed_1618
Hypothetical protein.
       0.559
Psed_1619
KEGG: cwo:Cwoe_0088 phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulpholactate synthase, ComA.
  
    0.541
Psed_1621
PFAM: Lyase 1, N-terminal; KEGG: nca:Noca_4818 fumarate lyase.
       0.536
Psed_1622
1-aminocyclopropane-1-carboxylate deaminase; KEGG: nca:Noca_4819 D-cysteine desulfhydrase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit.
       0.523
Psed_1625
KEGG: bge:BC1002_5635 hypothetical protein.
 
     0.443
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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