STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1847PFAM: Lipopolysaccharide biosynthesis; KEGG: amd:AMED_0550 exopolysaccharide biosynthesis protein. (877 aa)    
Predicted Functional Partners:
Psed_1851
PFAM: Heparinase II/III-like; KEGG: sco:SCO0388 hypothetical protein.
 
     0.955
Psed_1852
Lipoprotein; KEGG: amd:AMED_0554 lipoprotein.
 
     0.955
Psed_1850
Oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Alcohol dehydrogenase, C-terminal; Oxidoreductase, C-terminal; KEGG: amd:AMED_0552 oxidoreductase.
 
     0.952
Psed_1879
TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: gob:Gobs_0418 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase.
  
  
 0.918
Psed_1854
PFAM: Glycosyl transferase, group 1; KEGG: sco:SCO0391 transferase.
 
  
 0.910
Psed_1858
PFAM: Polysaccharide biosynthesis protein; KEGG: sco:SCO0397 integral membrane protein.
 
  
 0.878
Psed_1856
PFAM: Polysaccharide pyruvyl transferase; KEGG: amd:AMED_0562 hypothetical protein.
 
  
 0.874
Psed_1848
TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: sro:Sros_0655 GDP-mannose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal.
 
   
 0.868
Psed_1853
KEGG: amd:AMED_0555 hypothetical protein.
  
  
 0.859
Psed_1849
TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: sco:SCO0386 asparagine synthetase; PFAM: Asparagine synthase; Glycosyl transferase, group 1; Glutamine amidotransferase, class-II.
 
  
 0.857
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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