STRINGSTRING
Psed_1847 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1847" - Lipopolysaccharide biosynthesis protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1847Lipopolysaccharide biosynthesis protein (877 aa)    
Predicted Functional Partners:
Psed_1846
Lipopolysaccharide biosynthesis protein (551 aa)
              0.869
Psed_1848
Nucleotide sugar dehydrogenase (441 aa)
              0.866
Psed_1850
Oxidoreductase domain-containing protein (735 aa)
              0.832
Psed_1849
Asparagine synthase (1049 aa)
              0.830
Psed_1851
Heparinase II/III family protein (662 aa)
              0.830
Psed_1854
Group 1 glycosyl transferase (412 aa)
              0.829
Psed_1852
Lipoprotein (518 aa)
              0.829
Psed_1853
Hypothetical protein (420 aa)
              0.827
Psed_1845
Glutamate-1-semialdehyde 2,1-aminomutase (448 aa)
              0.538
Psed_1844
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (505 aa)
              0.517
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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