STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1855Hypothetical protein; KEGG: chl:Chy400_1601 transferase hexapeptide repeat containing protein. (191 aa)    
Predicted Functional Partners:
Psed_1858
PFAM: Polysaccharide biosynthesis protein; KEGG: sco:SCO0397 integral membrane protein.
  
  
 0.816
Psed_1856
PFAM: Polysaccharide pyruvyl transferase; KEGG: amd:AMED_0562 hypothetical protein.
  
  
 0.807
Psed_1857
PFAM: Glycosyl transferase, family 2; KEGG: amd:AMED_0563 glycosyltransferase.
  
  
 0.798
Psed_1879
TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: gob:Gobs_0418 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase.
 
  
 0.758
Psed_1886
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: ami:Amir_1737 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.521
Psed_1887
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: cai:Caci_8499 glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.514
Psed_1860
Glucose-1-phosphate cytidylyltransferase; KEGG: sco:SCO0393 transferase.
 
  
 0.511
Psed_2171
PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sco:SCO7518 TetR family transcriptional regulator.
     
 0.493
Psed_1859
Phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: amd:AMED_0557 integral membrane protein.
  
    0.492
Psed_1844
TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: sen:SACE_3176 undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase.
 
  
 0.478
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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