Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Psed_1920PFAM: Class II aldolase/adducin, N-terminal; KEGG: sus:Acid_5617 hypothetical protein. (274 aa)    
Predicted Functional Partners:
Psed_0428
TIGRFAM: Adenylosuccinate lyase; KEGG: sma:SAV_7077 adenylosuccinate lyase; PFAM: Lyase 1, N-terminal; Adenylosuccinate lyase C-terminal metazoa/fungi; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
    
 0.588
Psed_6249
HAMAP: Ribulose bisphosphate carboxylase, large subunit; KEGG: tcu:Tcur_1655 ribulose-bisphosphate carboxylase; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal; Belongs to the RuBisCO large chain family.
  
  
 0.516
Psed_2107
Methionine synthase; KEGG: tro:trd_1049 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; PFAM: Homocysteine S-methyltransferase; Methylenetetrahydrofolate reductase.
  
  
 0.494
Psed_1919
PFAM: Protein of unknown function DUF899, thioredoxin-like; KEGG: cwo:Cwoe_4051 protein of unknown function DUF899 thioredoxin family protein.
       0.493
Psed_3326
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
  
 0.485
Psed_1046
Citryl-CoA lyase; KEGG: ami:Amir_0805 citrate (pro-3S)-lyase; PFAM: Aldehyde-lyase domain; Belongs to the HpcH/HpaI aldolase family.
   
  
 0.460
Psed_2057
Citryl-CoA lyase; KEGG: fre:Franean1_6909 citrate (pro-3S)-lyase; PFAM: Aldehyde-lyase domain; Belongs to the HpcH/HpaI aldolase family.
   
  
 0.460
Psed_3591
KEGG: tcu:Tcur_3189 hypothetical protein.
   
  
 0.460
Psed_4109
HpcH/HpaI aldolase; PFAM: Aldehyde-lyase domain; KEGG: msm:MSMEG_6298 malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
   
  
 0.460
Psed_4168
KEGG: pth:PTH_1335 citrate lyase beta subunit; PFAM: Aldehyde-lyase domain; Belongs to the HpcH/HpaI aldolase family.
   
  
 0.460
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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