STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1925PFAM: HTH transcriptional regulator, LysR; KEGG: fri:FraEuI1c_3185 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (311 aa)    
Predicted Functional Partners:
Psed_4595
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nda:Ndas_3924 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.576
Psed_0792
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: amd:AMED_1937 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.511
Psed_0694
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: msm:MSMEG_1985 transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.502
Psed_3203
KEGG: sna:Snas_5097 transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; Transcription regulator MerR, DNA binding; SMART: HTH transcriptional regulator, MerR.
  
   
 0.489
Psed_1338
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pen:PSEEN2584 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.482
Psed_3156
PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: scb:SCAB_63591 hypothetical protein.
  
   
 0.476
Psed_0655
KEGG: ami:Amir_2134 hypothetical protein.
  
   
 0.461
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.457
Psed_2639
PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: cwo:Cwoe_3024 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.451
Psed_0905
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: msm:MSMEG_6677 transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.435
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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