Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_1971KEGG: nda:Ndas_0831 putative F420-dependent enzyme; TIGRFAM: F420-binding domain, putative; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain. (166 aa)    
Predicted Functional Partners:
Psed_1972
KEGG: mva:Mvan_5721 hypothetical protein.
       0.567
Psed_0192
PFAM: Nitroreductase-like; KEGG: gbr:Gbro_1352 nitroreductase.
 
    0.523
Psed_4209
KEGG: nda:Ndas_1607 putative F420-dependent enzyme; TIGRFAM: F420-binding domain, putative; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain.
  
   
 0.522
Psed_1593
Putative F420-dependent enzyme; KEGG: mbt:JTY_1895 hypothetical protein; TIGRFAM: F420-binding domain, putative; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain.
 
   
 0.494
Psed_3341
TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, MSMEG4141, predicted; KEGG: rha:RHA1_ro02439 hypothetical protein.
 
     0.483
valS
Valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.475
Psed_1473
Putative F420-dependent oxidoreductase; KEGG: fra:Francci3_2659 luciferase-like protein; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, MSMEG2516, predicted; PFAM: Luciferase-like, subgroup.
 
     0.471
Psed_1974
FolC bifunctional protein; TIGRFAM: Folylpolyglutamate synthetase; KEGG: rha:RHA1_ro01317 tetrahydrofolylpolyglutamate synthase; PFAM: Mur ligase, C-terminal; Mur ligase, central.
       0.469
Psed_1975
KEGG: svi:Svir_12380 hypothetical protein.
       0.469
Psed_0299
Putative F420-dependent enzyme; KEGG: msm:MSMEG_3380 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; TIGRFAM: F420-binding domain, putative; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain.
  
   
 0.445
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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