STRINGSTRING
Psed_1971 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1971" - F420-dependent protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1971F420-dependent protein (166 aa)    
Predicted Functional Partners:
Psed_1972
Hypothetical protein (238 aa)
              0.656
Psed_0299
F420-dependent protein (132 aa)
   
          0.604
Psed_1975
Hypothetical protein (136 aa)
              0.551
Psed_1974
Bifunctional folylpolyglutamate synthase/ dihydrofolate synthase (501 aa)
              0.551
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner (874 aa)
              0.551
Psed_5108
Hypothetical protein (182 aa)
   
          0.483
Psed_5166
Hypothetical protein (125 aa)
   
          0.476
Psed_1371
F420-dependent oxidoreductase (315 aa)
   
          0.467
Psed_2007
Hypothetical protein (259 aa)
   
          0.462
Psed_5016
Polyketide cyclase/dehydrase (188 aa)
   
          0.425
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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