STRINGSTRING
Psed_1979 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1979" - ABC transporter in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1979ABC transporter (278 aa)    
Predicted Functional Partners:
Psed_1978
Polyamine-transporting ATPase (307 aa)
 
   
    0.995
Psed_1980
ABC transporter (277 aa)
 
   
 
0.981
Psed_1981
Cupin (116 aa)
              0.583
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate (136 aa)
              0.509
Psed_6569
Sulfate-transporting ATPase (345 aa)
 
          0.465
Psed_1976
Lysyl oxidase-like protein (317 aa)
 
          0.423
Psed_0990
ABC transporter integral membrane protein (283 aa)
   
          0.423
Psed_4498
Hypothetical protein (276 aa)
   
          0.420
Psed_4352
Major facilitator superfamily protein (432 aa)
   
          0.409
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (6%) [HD]