Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_1979PFAM: ABC-2 type transporter; KEGG: amd:AMED_6710 ABC transport system permease protein. (278 aa)    
Predicted Functional Partners:
Psed_1978
Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: ami:Amir_1173 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
 
 0.992
Psed_1980
PFAM: ABC-2 type transporter; KEGG: amd:AMED_6709 ABC-2 type transporter.
 
  
 
0.982
Psed_1981
PFAM: Cupin 2, conserved barrel; KEGG: mil:ML5_2039 cupin 2 conserved barrel domain protein.
       0.528
Psed_4964
SMART: ATPase, AAA+ type, core; TIGRFAM: Daunorubicin resistance ABC transporter ATP-binding subunit; KEGG: sma:SAV_5961 ABC transporter ATP-binding protein; PFAM: ABC transporter-like.
 
  
 0.505
Psed_0584
SMART: ATPase, AAA+ type, core; TIGRFAM: Daunorubicin resistance ABC transporter ATP-binding subunit; KEGG: amd:AMED_5929 ATPase component of ABC-type multidrug transport system; PFAM: ABC transporter-like.
 
  
 0.489
Psed_0844
SMART: ATPase, AAA+ type, core; TIGRFAM: Daunorubicin resistance ABC transporter ATP-binding subunit; KEGG: tcu:Tcur_1684 daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter-like.
 
  
 0.485
Psed_3645
Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: rop:ROP_48820 putative ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.
 
  
 0.472
Psed_4618
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: bcv:Bcav_3544 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
  
 0.470
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
       0.469
Psed_0322
Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: aau:AAur_3041 putative ABC-type multidrug transport system, ATPase component; SMART: ATPase, AAA+ type, core.
 
  
 0.459
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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