STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1981PFAM: Cupin 2, conserved barrel; KEGG: mil:ML5_2039 cupin 2 conserved barrel domain protein. (116 aa)    
Predicted Functional Partners:
Psed_1979
PFAM: ABC-2 type transporter; KEGG: amd:AMED_6710 ABC transport system permease protein.
       0.528
Psed_1980
PFAM: ABC-2 type transporter; KEGG: amd:AMED_6709 ABC-2 type transporter.
       0.528
Psed_1978
Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: ami:Amir_1173 ABC transporter related; SMART: ATPase, AAA+ type, core.
     
 0.521
Psed_2153
PFAM: Domain of unknown function DUF861, cupin-3; KEGG: rop:ROP_54960 hypothetical protein.
  
  
 0.516
Psed_4631
Putative transcriptional regulator; PFAM: LexA, DNA-binding domain; KEGG: nca:Noca_4860 transcriptional regulator.
 
    0.507
Psed_4632
KEGG: rha:RHA1_ro08094 hypothetical protein.
 
     0.497
Psed_1982
KEGG: svi:Svir_26400 hypothetical protein.
       0.496
Psed_3202
KEGG: rha:RHA1_ro08261 MarR family transcriptional regulator.
 
    0.473
dapA-2
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
   
   0.447
Psed_0243
KEGG: cwo:Cwoe_3826 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Metal-dependent phosphohydrolase, HD subdomain; SMART: Transcription regulator LuxR, C-terminal.
  
    0.439
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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