Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_1985PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: srt:Srot_2543 GCN5-related N-acetyltransferase. (184 aa)    
Predicted Functional Partners:
Psed_1984
Radical SAM domain protein; KEGG: sen:SACE_1403 putative Fe-S oxidoreductase; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
       0.779
Psed_1986
PFAM: Protein of unknown function DUF2344; KEGG: sen:SACE_1405 hypothetical protein.
 
     0.730
Psed_4722
Hypothetical protein; KEGG: dgr:Dgri_GH10507 GH10507 gene product from transcript GH10507-RA.
 
     0.673
Psed_3156
PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: scb:SCAB_63591 hypothetical protein.
 
     0.639
Psed_2091
KEGG: nml:Namu_2347 hypothetical protein.
  
     0.638
Psed_6666
Protein of unknown function UPF0158; PFAM: Uncharacterised protein family UPF0158; KEGG: amd:AMED_5605 hypothetical protein.
  
     0.609
Psed_2092
PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nml:Namu_2348 haloacid dehalogenase domain-containing protein hydrolase.
 
     0.605
Psed_2946
KEGG: cai:Caci_5446 hypothetical protein.
 
     0.602
Psed_5163
KEGG: sen:SACE_6437 hypothetical protein.
  
     0.591
Psed_1620
KEGG: nca:Noca_4838 hypothetical protein.
  
     0.573
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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