Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_1995PFAM: vWA containing CoxE-like; KEGG: rop:ROP_10200 hypothetical protein. (472 aa)    
Predicted Functional Partners:
Psed_1994
ATPase associated with various cellular activities AAA_5; KEGG: rha:RHA1_ro01299 hypothetical protein; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core.
 
    0.952
Psed_2641
ATPase associated with various cellular activities AAA_5; KEGG: nca:Noca_0239 ATPase; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core.
 
    0.756
Psed_5737
ATPase associated with various cellular activities AAA_5; KEGG: rop:ROP_50460 hypothetical protein; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core.
 
    0.756
Psed_6137
ATPase associated with various cellular activities AAA_5; KEGG: aeh:Mlg_1565 ATPase; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core.
 
    0.735
Psed_1993
TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; KEGG: ami:Amir_1193 ATP-dependent DNA helicase, RecQ family; SMART: Helicase, C-terminal; DEAD-like helicase, N-terminal.
       0.547
Psed_5738
VWA containing CoxE family protein; KEGG: svi:Svir_13090 protein containing von Willebrand factor type A (vWA) domain protein; PFAM: vWA containing CoxE-like; SMART: von Willebrand factor, type A.
  
     0.470
Psed_1996
Regulatory protein ArsR; KEGG: cwo:Cwoe_3384 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.
       0.462
Psed_1997
PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: amd:AMED_0950 hypothetical protein.
       0.462
Psed_5682
KEGG: nfa:nfa34420 hypothetical protein.
 
     0.457
Psed_5681
Radical SAM domain protein; KEGG: rha:RHA1_ro06072 coenzyme synthesis protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
 
     0.423
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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