STRINGSTRING
Psed_1996 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1996" - Regulatory protein ArsR in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1996Regulatory protein ArsR (106 aa)    
Predicted Functional Partners:
Psed_1997
Activator of Hsp90 ATPase 1 family protein (100 aa)
              0.866
Psed_6308
Activator of Hsp90 ATPase 1 family protein (165 aa)
 
          0.705
Psed_3239
Regulatory protein ArsR (116 aa)
   
          0.643
Psed_2107
Methionine synthase (603 aa)
         
  0.639
Psed_1083
UBA/THIF-type NAD/FAD binding protein (390 aa)
   
 
  0.635
Psed_3326
Methionine synthase (1190 aa)
         
  0.633
Psed_5687
2,4-dienoyl-CoA reductase (650 aa)
   
   
  0.624
Psed_1556
2,4-dienoyl-CoA reductase (675 aa)
   
   
  0.624
Psed_1998
Hypothetical protein (117 aa)
              0.583
Psed_5956
ArsR family transcriptional regulator (129 aa)
   
          0.564
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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