Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_1997PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: amd:AMED_0950 hypothetical protein. (100 aa)    
Predicted Functional Partners:
Psed_1996
Regulatory protein ArsR; KEGG: cwo:Cwoe_3384 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.
  
  
 0.790
Psed_1999
Transcriptional regulator, putative ATPase, winged helix family; KEGG: sro:Sros_0735 ATPase-like protein; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal.
 
     0.581
Psed_1998
KEGG: sgr:SGR_1198 hypothetical protein.
       0.517
Psed_1994
ATPase associated with various cellular activities AAA_5; KEGG: rha:RHA1_ro01299 hypothetical protein; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core.
       0.465
Psed_1995
PFAM: vWA containing CoxE-like; KEGG: rop:ROP_10200 hypothetical protein.
       0.462
Psed_5190
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fre:Franean1_5224 TetR family transcriptional regulator.
  
     0.415
Psed_3091
PFAM: Bacterial transcriptional activator domain; KEGG: ach:Achl_4571 transcriptional activator domain protein.
  
     0.403
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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