STRINGSTRING
Psed_1998 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1998" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1998Hypothetical protein (117 aa)    
Predicted Functional Partners:
Psed_1999
Winged helix family transcriptional regulator (1107 aa)
              0.657
Psed_0134
Hypothetical protein (177 aa)
   
          0.651
Psed_4869
Peptidase M48 Ste24p (379 aa)
 
          0.640
Psed_4036
Hypothetical protein (1506 aa)
   
          0.634
Psed_1996
Regulatory protein ArsR (106 aa)
              0.583
Psed_1997
Activator of Hsp90 ATPase 1 family protein (100 aa)
              0.582
Psed_6226
Hypothetical protein (303 aa)
   
          0.579
Psed_4037
Hypothetical protein (240 aa)
   
          0.575
Psed_3885
Hypothetical protein (820 aa)
   
          0.562
Psed_4261
Hypothetical protein (139 aa)
   
          0.550
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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