STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2000PFAM: Haemerythrin/HHE cation-binding motif; KEGG: sro:Sros_0736 hypothetical protein. (223 aa)    
Predicted Functional Partners:
Psed_1999
Transcriptional regulator, putative ATPase, winged helix family; KEGG: sro:Sros_0735 ATPase-like protein; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal.
 
     0.739
Psed_6551
Nitric oxide dioxygenase; KEGG: ami:Amir_6945 oxidoreductase FAD-binding domain protein; PFAM: Oxidoreductase FAD/NAD(P)-binding; Globin, subset; Oxidoreductase, FAD-binding domain; Belongs to the globin family.
  
  
 0.731
Psed_5994
TIGRFAM: Conserved hypothetical protein CHP03086; Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: scb:SCAB_5731 hypothetical protein.
  
     0.685
Psed_2043
PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: gob:Gobs_4877 activator of HSP90 ATPase 1 family protein.
  
     0.556
Psed_6538
AAA ATPase central domain protein; KEGG: sro:Sros_6483 ATP-dependent Zn protease-like protein; PFAM: ATPase, AAA-type, core; Peptidase M41; SMART: ATPase, AAA+ type, core; Belongs to the AAA ATPase family.
 
     0.550
Psed_1081
KEGG: sro:Sros_3700 hypothetical protein.
 
   
 0.481
Psed_0578
PFAM: Cupin 2, conserved barrel; KEGG: sro:Sros_8205 hypothetical protein.
  
     0.469
Psed_2001
KEGG: sen:SACE_6240 hypothetical protein.
       0.461
Psed_1465
Regulatory protein LuxR; KEGG: nml:Namu_2913 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.
 
     0.456
Psed_4325
Nitric oxide dioxygenase; KEGG: amd:AMED_3893 phthalate 4,5-dioxygenase; PFAM: Molybdenum cofactor sulfurase, C-terminal; Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; Ferredoxin.
  
  
 0.433
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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