STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2001KEGG: sen:SACE_6240 hypothetical protein. (107 aa)    
Predicted Functional Partners:
Psed_2002
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_1576 TetR family transcriptional regulator.
 
     0.868
Psed_5939
KEGG: rha:RHA1_ro08581 hypothetical protein.
  
     0.545
Psed_0607
KEGG: amd:AMED_8472 hypothetical protein.
  
     0.491
Psed_6558
KEGG: sen:SACE_1599 hypothetical protein.
  
     0.488
Psed_6070
KEGG: cai:Caci_3238 hypothetical protein.
  
     0.487
Psed_2003
KEGG: afw:Anae109_1653 putative alkylated DNA repair protein.
       0.469
Psed_2000
PFAM: Haemerythrin/HHE cation-binding motif; KEGG: sro:Sros_0736 hypothetical protein.
       0.461
Psed_0564
KEGG: svi:Svir_37150 hypothetical protein.
  
     0.454
Psed_1219
KEGG: fra:Francci3_2715 hypothetical protein.
  
     0.450
Psed_6508
KEGG: ami:Amir_0254 hypothetical protein.
  
     0.439
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.