STRINGSTRING
Psed_2003 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2003" - Alkylated DNA repair protein in Pseudonocardia dioxanivorans
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2003Alkylated DNA repair protein (205 aa)    
Predicted Functional Partners:
Psed_0969
DNA repair protein and transcriptional regulator (514 aa)
   
   
  0.783
Psed_2002
TetR family transcriptional regulator (187 aa)
              0.759
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) (200 aa)
              0.756
Psed_1260
DEAD/DEAH box helicase domain-containing protein (1170 aa)
     
    0.611
Psed_0144
methylated-DNA--protein-cysteine methyltransferase (183 aa)
 
   
  0.580
Psed_2006
Phosphoglycerate mutase (208 aa)
   
        0.575
Psed_2007
Hypothetical protein (259 aa)
              0.561
rsfS
Iojap family protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation (140 aa)
              0.561
Psed_2008
degV family protein (307 aa)
              0.547
Psed_6345
Homogentisate 12-dioxygenase (399 aa)
   
        0.534
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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