STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Psed_2003KEGG: afw:Anae109_1653 putative alkylated DNA repair protein. (205 aa)    
Predicted Functional Partners:
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
       0.693
Psed_2002
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_1576 TetR family transcriptional regulator.
       0.678
Psed_0290
KEGG: tfu:Tfu_1507 methylated-DNA-(protein)-cysteine S-methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Ada DNA repair, metal-binding.
  
  
 0.649
Psed_0969
DNA repair protein and transcriptional regulator, AraC family; KEGG: svi:Svir_31420 DNA-3-methyladenine glycosylase II/DNA-O6-methylguanine--protein-cysteine S-methyltransferase/transcriptional regulator Ada; PFAM: Ada DNA repair, metal-binding; HTH transcriptional regulator, AraC; AlkA, N-terminal; HhH-GPD domain; SMART: Helix-turn-helix, AraC type, DNA binding domain; HhH-GPD domain.
  
  
 0.630
Psed_2006
KEGG: amd:AMED_6693 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1; Belongs to the phosphoglycerate mutase family.
       0.499
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
       0.495
Psed_2007
KEGG: ami:Amir_1200 hypothetical protein.
       0.495
Psed_0955
PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal; KEGG: fre:Franean1_2019 ketopantoate reductase ApbA/PanE.
   
    0.491
Psed_1637
PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal; KEGG: bcv:Bcav_4029 2-dehydropantoate 2-reductase.
   
    0.491
Psed_2199
Ketopantoate reductase ApbA/PanE domain protein; KEGG: fal:FRAAL3862 thiosulfate sulfurtransferase (partial match); PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal; Rhodanese-like; SMART: Rhodanese-like.
   
    0.491
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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