STRINGSTRING
Psed_2007 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2007" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2007Hypothetical protein (259 aa)    
Predicted Functional Partners:
Psed_2006
Phosphoglycerate mutase (208 aa)
   
        0.893
Psed_2008
degV family protein (307 aa)
 
        0.885
rsfS
Iojap family protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation (140 aa)
   
        0.884
Psed_3059
Hypothetical protein (250 aa)
   
          0.778
Psed_3284
Hypothetical protein (683 aa)
   
          0.777
Psed_2767
Hypothetical protein (193 aa)
   
          0.777
Psed_0964
Hypothetical protein (216 aa)
   
          0.775
Psed_3952
Hypothetical protein (151 aa)
   
        0.774
Psed_0164
Hypothetical protein (275 aa)
   
          0.770
Psed_3053
Hypothetical protein (219 aa)
   
          0.769
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (10%) [HD]