STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2007KEGG: ami:Amir_1200 hypothetical protein. (259 aa)    
Predicted Functional Partners:
Psed_2006
KEGG: amd:AMED_6693 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1; Belongs to the phosphoglycerate mutase family.
  
  
 0.911
Psed_2008
KEGG: ami:Amir_1201 DegV family protein; TIGRFAM: DegV; PFAM: DegV.
     
 0.896
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
       0.851
Psed_1755
PFAM: Methyltransferase type 11; KEGG: ami:Amir_6056 methyltransferase type 11.
 
  
 0.813
Psed_1741
KEGG: ami:Amir_6061 acetyltransferase (isoleucine patch superfamily)-like protein.
 
   
 0.800
Psed_1754
PFAM: Domain of unknown function DUF1957; Glycoside hydrolase, family 57, N-terminal; KEGG: ami:Amir_6057 glycoside hydrolase family 57; Belongs to the glycosyl hydrolase 57 family.
  
   
 0.790
Psed_3059
KEGG: svi:Svir_24240 hypothetical protein.
 
  
 0.778
Psed_5356
KEGG: req:REQ_34970 hypothetical protein.
  
     0.772
Psed_2767
KEGG: amd:AMED_2446 hypothetical protein.
 
     0.771
Psed_3952
KEGG: mav:MAV_3625 hypothetical protein.
  
     0.770
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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