Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Psed_2014PFAM: Alpha/beta hydrolase fold-1; KEGG: gob:Gobs_3876 alpha/beta hydrolase fold protein. (251 aa)    
Predicted Functional Partners:
Psed_1601
Hypothetical protein; KEGG: mva:Mvan_3374 aminoglycoside phosphotransferase.
 
     0.590
Psed_1958
KEGG: scb:SCAB_4341 hypothetical protein.
  
     0.521
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
    0.501
Psed_4284
PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: nca:Noca_2142 hypothetical protein.
 
  
 0.497
Psed_0914
PFAM: Luciferase-like, subgroup; KEGG: amd:AMED_3495 luciferase-like protein.
 
    0.473
Psed_2462
KEGG: pla:Plav_3077 hypothetical protein.
 
     0.455
Psed_5440
KEGG: amd:AMED_1772 hypothetical protein.
 
 0.446
Psed_0519
PFAM: Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: nca:Noca_4134 acyl-CoA dehydrogenase domain-containing protein.
  
  0.444
Psed_4786
KEGG: rha:RHA1_ro06730 hypothetical protein.
 
 0.437
Psed_5441
KEGG: sen:SACE_6857 hypothetical protein.
 
 0.437
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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