STRINGSTRING
Psed_2014 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2014" - Alpha/beta hydrolase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2014Alpha/beta hydrolase (251 aa)    
Predicted Functional Partners:
Psed_4316
Hypothetical protein (200 aa)
   
          0.734
Psed_5394
Hypothetical protein (138 aa)
   
          0.641
Psed_1586
Hypothetical protein (933 aa)
   
          0.635
Psed_6006
Hypothetical protein (121 aa)
   
          0.611
Psed_1498
Hypothetical protein (114 aa)
   
          0.596
Psed_1629
Hypothetical protein (133 aa)
   
          0.571
Psed_1007
Hypothetical protein (297 aa)
   
          0.569
Psed_6410
Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin (219 aa)
   
          0.557
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA (91 aa)
              0.546
Psed_3154
SARP family transcriptional regulator (285 aa)
   
          0.537
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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