STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2090PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: nml:Namu_2346 ethanolamine utilization protein EutN/carboxysome structural protein CcmL. (97 aa)    
Predicted Functional Partners:
Psed_2089
KEGG: nml:Namu_2345 microcompartments protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria.
 
 
 0.982
Psed_2082
KEGG: nml:Namu_2338 microcompartments protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria.
 
 
 0.953
Psed_2086
KEGG: nml:Namu_2342 microcompartments protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria.
 
 
 0.943
Psed_2087
TIGRFAM: Ethanolamine utilisation EutJ; KEGG: nml:Namu_2343 ethanolamine utilization protein EutJ family protein.
 
  
 0.932
Psed_2088
Acetaldehyde dehydrogenase (acetylating); KEGG: nml:Namu_2344 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain.
 
  
 0.853
Psed_2092
PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nml:Namu_2348 haloacid dehalogenase domain-containing protein hydrolase.
 
     0.605
Psed_2091
KEGG: nml:Namu_2347 hypothetical protein.
 
     0.601
Psed_2083
KEGG: nml:Namu_2339 putative PucR family transcriptional regulator; PFAM: GAF; SMART: GAF.
 
     0.585
Psed_2093
KEGG: nml:Namu_2349 protein tyrosine/serine phosphatase.
       0.508
Psed_2085
HAMAP: Malate dehydrogenase, NAD-dependent; KEGG: nml:Namu_2341 lactate/malate dehydrogenase; PFAM: Lactate/malate dehydrogenase, N-terminal; Lactate/malate dehydrogenase, C-terminal.
       0.505
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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