STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2095KEGG: nml:Namu_2358 hypothetical protein. (206 aa)    
Predicted Functional Partners:
Psed_2094
KEGG: nml:Namu_2357 pyruvate phosphate dikinase PEP/pyruvate-binding; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme.
 
     0.838
Psed_2091
KEGG: nml:Namu_2347 hypothetical protein.
  
     0.710
Psed_2092
PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nml:Namu_2348 haloacid dehalogenase domain-containing protein hydrolase.
  
     0.701
Psed_1488
KEGG: rha:RHA1_ro02179 hypothetical protein.
  
     0.567
Psed_2096
KEGG: nml:Namu_2359 hypothetical protein.
       0.564
Psed_1950
KEGG: ami:Amir_4801 SNARE associated Golgi protein.
  
     0.552
Psed_2097
KEGG: nml:Namu_2360 hypothetical protein.
       0.548
Psed_2537
PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: rop:ROP_29680 hypothetical protein.
 
     0.537
Psed_0035
PFAM: TrwC relaxase; KEGG: kfl:Kfla_2190 TrwC relaxase.
  
     0.503
Psed_2083
KEGG: nml:Namu_2339 putative PucR family transcriptional regulator; PFAM: GAF; SMART: GAF.
  
     0.501
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.