STRINGSTRING
Psed_2115 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2115" - Hypothetical protein in Pseudonocardia dioxanivorans
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2115Hypothetical protein (700 aa)    
Predicted Functional Partners:
Psed_3275
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters (113 aa)
 
        0.771
Psed_0898
Hypothetical protein (176 aa)
   
          0.713
Psed_4621
Helix-turn-helix domain-containing protein (123 aa)
   
        0.703
Psed_4736
Hypothetical protein (107 aa)
   
          0.691
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (92 aa)
 
          0.690
nucS
Hypothetical protein; Cleaves both 3’ and 5’ ssDNA extremities of branched DNA structures (219 aa)
   
          0.669
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (291 aa)
   
        0.660
Psed_3823
Hypothetical protein (334 aa)
   
          0.652
Psed_3320
tRNA (adenine-N(1)-)-methyltransferase (310 aa)
   
        0.651
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) (331 aa)
              0.651
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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