STRINGSTRING
Psed_2129 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2129" - Excisionase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2129Excisionase (70 aa)    
Predicted Functional Partners:
Psed_1507
Hypothetical protein (185 aa)
   
          0.680
Psed_5182
Lipoprotein LpqB, beta-propeller domain-containing protein (570 aa)
   
          0.644
Psed_2893
Hypothetical protein (197 aa)
   
          0.629
Psed_2132
Hypothetical protein (162 aa)
 
          0.597
Psed_3809
Chromosome segregation and condensation protein ScpA (282 aa)
   
          0.576
Psed_2130
Transglutaminase domain-containing protein (230 aa)
              0.540
Psed_2903
TAP domain-containing protein (539 aa)
   
          0.535
Psed_2131
Beta-lactamase domain-containing protein (359 aa)
              0.529
Psed_6226
Hypothetical protein (303 aa)
   
          0.515
Psed_2813
Hypothetical protein (95 aa)
   
          0.510
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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