STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2139Pirin domain protein; PFAM: Pirin, N-terminal; KEGG: req:REQ_42380 pirin-like protein; Belongs to the pirin family. (255 aa)    
Predicted Functional Partners:
Psed_2138
KEGG: ami:Amir_1328 putative transcriptional regulator, PucR family.
       0.619
Psed_0244
PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: mil:ML5_2012 extradiol ring-cleavage dioxygenase class III protein subunit B.
 
  
 0.592
Psed_2193
KEGG: fal:FRAAL2482 putative alkanesulfonate monooxygenase; PFAM: Luciferase-like, subgroup.
  
  
 0.533
Psed_2200
KEGG: fal:FRAAL3868 putative alkanesulfonate monooxygenase.
  
  
 0.533
Psed_4517
KEGG: sma:SAV_6696 monooxygenase; PFAM: Luciferase-like, subgroup.
  
  
 0.533
Psed_2324
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: Sporulation stage II, protein E C-terminal; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; Signal transduction response regulator, receiver domain; PAS fold-3; GAF; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: gob:Gobs_0116 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; PAC motif; Si [...]
 
  
 0.493
Psed_2137
(Acyl-carrier-protein) S-malonyltransferase; PFAM: Acyl transferase; KEGG: rha:RHA1_ro01199 [acyl-carrier protein] S-malonyltransferase; SMART: Polyketide synthase, acyl transferase domain.
     
 0.456
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
       0.417
Psed_6345
PFAM: Homogentisate 1,2-dioxygenase; KEGG: sen:SACE_3944 homogentisate 1,2-dioxygenase.
     
 0.410
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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