STRINGSTRING
Psed_2139 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2139" - Pirin in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2139Pirin (255 aa)    
Predicted Functional Partners:
Psed_0244
Extradiol ring-cleavage dioxygenase class III protein subunit B (301 aa)
 
   
  0.708
Psed_2138
PucR family transcriptional regulator (505 aa)
              0.626
Psed_3628
Pirin (328 aa)
 
   
0.616
Psed_2175
NADPH dehydrogenase (330 aa)
 
   
  0.597
Psed_5687
2,4-dienoyl-CoA reductase (650 aa)
   
   
  0.581
Psed_1556
2,4-dienoyl-CoA reductase (675 aa)
   
   
  0.581
Psed_5680
2,4-dienoyl-CoA reductase (1284 aa)
 
   
  0.546
Psed_4184
NADPH dehydrogenase (957 aa)
 
   
  0.538
Psed_4104
NADPH dehydrogenase (359 aa)
 
   
  0.536
Psed_4248
NADPH dehydrogenase (748 aa)
 
        0.533
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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