Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_2155KEGG: gbr:Gbro_2666 IstB domain-containing protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core. (259 aa)    
Predicted Functional Partners:
Psed_2156
PFAM: Integrase, catalytic core; KEGG: mav:MAV_3533 transposase.
 
 
 0.954
Psed_0016
PFAM: Integrase, catalytic core; KEGG: cai:Caci_3873 integrase catalytic region.
 
 
 0.812
Psed_0909
PFAM: Integrase, catalytic core; KEGG: mav:MAV_3533 transposase.
 
 
 0.810
Psed_1256
PFAM: Integrase, catalytic core; KEGG: mav:MAV_3533 transposase.
 
 
 0.810
Psed_3250
PFAM: Integrase, catalytic core; KEGG: cai:Caci_3873 integrase catalytic region.
 
 
 0.809
Psed_4813
PFAM: Integrase, catalytic core; KEGG: rer:pREL1_0265 transposase.
 
 
 0.696
Psed_0028
PFAM: Integrase, catalytic core; KEGG: rer:pREL1_0265 transposase.
 
 
 0.681
Psed_1146
PFAM: Integrase, catalytic core; KEGG: rer:pREL1_0265 transposase.
 
 
 0.681
Psed_3944
PFAM: Integrase, catalytic core; KEGG: rer:pREL1_0265 transposase.
 
 
 0.681
Psed_5339
PFAM: Integrase, catalytic core; KEGG: rer:pREL1_0265 transposase.
 
 
 0.674
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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