Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_2163PFAM: Domain of unknown function DUF1355; KEGG: cdl:CDR20291_0307 hypothetical protein. (260 aa)    
Predicted Functional Partners:
Psed_2159
PFAM: Aryldialkylphosphatase; KEGG: rer:RER_52720 phosphatase.
 
    0.808
Psed_2144
PFAM: Aryldialkylphosphatase; KEGG: rer:RER_52720 phosphatase.
 
    0.743
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
       0.631
Psed_2164
KEGG: sth:STH770 LacI family transcriptional repressor; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI.
       0.626
Psed_2162
Lactaldehyde dehydrogenase; KEGG: fal:FRAAL6082 putative succinate-semialdehyde dehydrogenase I, NADP-dependent; PFAM: Aldehyde dehydrogenase domain.
       0.531
Psed_2166
TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: cwo:Cwoe_5250 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase.
       0.524
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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