Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene co-occurrence
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Score
Psed_2164KEGG: sth:STH770 LacI family transcriptional repressor; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI. (344 aa)    
Predicted Functional Partners:
Psed_2974
TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; Dihydroxyacetone kinase, subunit phosphotransferase; KEGG: msm:MSMEG_2121 multiphosphoryl transfer protein (MTP); PFAM: PEP-utilising enzyme; Phosphotransferase system, fructose subfamily IIA component; Phosphotransferase system, phosphocarrier HPr protein; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile domain; Belongs to the PEP-utilizing enzyme family.
 
 
 0.919
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.918
Psed_1955
KEGG: sen:SACE_3998 putative glutamate synthase(NADPH) large subunit; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal.
   
 
 0.787
Psed_1802
Manually curated; PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: nda:Ndas_3659 transcriptional regulator, LacI family; SMART: HTH transcriptional regulator, LacI.
  
     0.774
Psed_2166
TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: cwo:Cwoe_5250 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase.
  
 
 0.722
Psed_2163
PFAM: Domain of unknown function DUF1355; KEGG: cdl:CDR20291_0307 hypothetical protein.
       0.626
Psed_2259
Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; ABC transporter permease; KEGG: cwo:Cwoe_3938 ABC transporter related protein; SMART: ATPase, AAA+ type, core; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.592
Psed_3664
TIGRFAM: Galactokinase; KEGG: svi:Svir_14320 galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase, C-terminal; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.575
Psed_5017
Fructokinase; KEGG: saq:Sare_3490 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.574
Psed_3190
ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: rhi:NGR_c06530 hypothetical ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.539
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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