Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_2170KEGG: rha:RHA1_ro11047 oxidoreductase; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding. (170 aa)    
Predicted Functional Partners:
Psed_2169
PFAM: Alpha/beta hydrolase fold-1; KEGG: scb:SCAB_77421 hydrolase.
  
  
 0.624
Psed_2167
PFAM: Luciferase-like, subgroup; KEGG: sme:SMa0794 monoxygenase.
 
  
 0.564
Psed_2168
PFAM: Amidohydrolase 1; KEGG: aba:Acid345_1826 Pro-Hyp dipeptidase.
       0.497
Psed_2171
PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sco:SCO7518 TetR family transcriptional regulator.
       0.437
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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