Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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Score
Psed_2196Trimethylamine-N-oxide reductase (cytochrome c); KEGG: bbr:BB1545 putative biotin sulfoxide reductase; PFAM: Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (752 aa)    
Predicted Functional Partners:
Psed_5260
KEGG: mil:ML5_1093 biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Biotin protein ligase, C-terminal.
    
 0.904
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
     
  0.900
Psed_2417
PFAM: 4Fe-4S binding domain; KEGG: sen:SACE_3563 4Fe-4S ferredoxin, iron-sulfur binding protein.
 
 
 0.881
Psed_3297
KEGG: scb:SCAB_16891 respiratory chain oxidoreductase; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; NADH:ubiquinone oxidoreductase, 24kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding.
  
 
 0.848
Psed_2756
PFAM: Cytochrome c, class I; KEGG: amd:AMED_2201 ubiquinol-cytochrome c reductase cytochrome c subunit.
  
 
 0.753
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.743
Psed_1955
KEGG: sen:SACE_3998 putative glutamate synthase(NADPH) large subunit; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal.
  
  
 0.590
Psed_2755
Rieske (2Fe-2S) iron-sulfur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: sen:SACE_1686 ubiquinol-cytochrome c reductase iron-sulfur subunit.
   
 
 0.570
Psed_4723
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: tcu:Tcur_2193 Rieske (2Fe-2S) domain-containing protein.
   
 
 0.570
Psed_2197
PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: fri:FraEuI1c_2012 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
     
 0.470
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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