Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_2201D-lactate dehydrogenase (cytochrome); KEGG: fal:FRAAL3861 putative glycolate oxidoreductase (partial match); PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal. (444 aa)    
Predicted Functional Partners:
Psed_5115
2-oxoglutarate dehydrogenase, E1 subunit; SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; KEGG: ami:Amir_6253 alpha-ketoglutarate decarboxylase; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; 2-oxoacid dehydrogenase acyltransferase, catalytic domain.
  
 
 0.919
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
 
 0.915
Psed_1785
KEGG: hoh:Hoch_1789 serine--pyruvate transaminase; PFAM: Aminotransferase, class V/Cysteine desulfurase.
  
 
 0.910
Psed_3890
TIGRFAM: Glyoxylate carboligase; KEGG: psa:PST_3114 glyoxylate carboligase; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Belongs to the TPP enzyme family.
     
 0.900
Psed_2199
Ketopantoate reductase ApbA/PanE domain protein; KEGG: fal:FRAAL3862 thiosulfate sulfurtransferase (partial match); PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal; Rhodanese-like; SMART: Rhodanese-like.
     
 0.782
Psed_2198
KEGG: fre:Franean1_2021 hypothetical protein.
     
 0.780
Psed_2202
PFAM: Class II aldolase/adducin, N-terminal; KEGG: stp:Strop_2788 hypothetical protein.
     
 0.779
Psed_2200
KEGG: fal:FRAAL3868 putative alkanesulfonate monooxygenase.
       0.774
Psed_2092
PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nml:Namu_2348 haloacid dehalogenase domain-containing protein hydrolase.
    
 0.673
Psed_2743
PFAM: Haloacid dehalogenase-like hydrolase; KEGG: cmi:CMM_2866 putative hydrolase.
    
 0.673
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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