STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2234Thiolase; KEGG: rpa:RPA3462 thiolase. (380 aa)    
Predicted Functional Partners:
Psed_0649
3-hydroxybutyryl-CoA epimerase; KEGG: sma:SAV_1680 fatty acid oxidation complex alpha-subunit; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal.
  
 0.918
Psed_1382
PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: mav:MAV_5258 hypothetical protein.
 
 
 0.911
Psed_1806
PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: axy:AXYL_01704 hypothetical protein.
 
 
 0.911
Psed_0626
PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: amd:AMED_3868 hypothetical protein.
 
 
 0.905
Psed_2579
PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: amd:AMED_3868 hypothetical protein.
 
 
 0.900
Psed_3211
PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: rer:RER_07920 hypothetical protein.
 
 
 0.895
Psed_2235
PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: bja:blr3928 hypothetical protein.
  
 
 0.890
Psed_2495
PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: vei:Veis_4005 hypothetical protein.
 
 
 0.864
Psed_2236
CoA-binding domain protein; KEGG: rpd:RPD_3312 CoA-binding; PFAM: CoA-binding; SMART: CoA-binding.
 
  
 0.853
Psed_2237
KEGG: rha:RHA1_ro06956 hypothetical protein.
       0.722
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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