Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_2247KEGG: fre:Franean1_4489 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (288 aa)    
Predicted Functional Partners:
Psed_2248
KEGG: tcu:Tcur_4169 hypothetical protein.
       0.773
Psed_3724
KEGG: sti:Sthe_3439 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.
  
     0.730
Psed_2256
KEGG: nml:Namu_2355 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A.
 
     0.611
Psed_2113
KEGG: fri:FraEuI1c_0640 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR.
 
  
 0.598
Psed_1076
PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mil:ML5_5255 short-chain dehydrogenase/reductase sdr.
 
 
 
 0.591
Psed_5682
KEGG: nfa:nfa34420 hypothetical protein.
  
   
 0.590
Psed_5681
Radical SAM domain protein; KEGG: rha:RHA1_ro06072 coenzyme synthesis protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
  
   
 0.589
Psed_2249
NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: sen:SACE_7338 zinc-binding oxidoreductase; SMART: Polyketide synthase, enoylreductase.
  
 
 0.566
Psed_5677
PFAM: Glycosyl transferase, family 2; KEGG: gob:Gobs_4928 family 2 glycosyl transferase.
 
     0.545
Psed_3687
Short-chain dehydrogenase/reductase SDR; KEGG: sen:SACE_4323 short chain dehydrogenase/reductase family oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 
 0.510
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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