Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_2255ATPase associated with various cellular activities AAA_5; PFAM: ATPase, AAA-5; KEGG: nml:Namu_2354 ATPase. (304 aa)    
Predicted Functional Partners:
Psed_2256
KEGG: nml:Namu_2355 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A.
  
 0.943
Psed_2253
PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mkm:Mkms_0332 short-chain dehydrogenase/reductase SDR.
 
   
 0.803
Psed_2251
Carbon-monoxide dehydrogenase (acceptor); KEGG: sti:Sthe_0231 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin.
     
 0.783
Psed_2250
Carbon-monoxide dehydrogenase (acceptor); Manually curated; KEGG: sti:Sthe_2813 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal.
     
 0.780
Psed_2252
Carbon-monoxide dehydrogenase (acceptor); KEGG: sti:Sthe_2310 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead.
     
 0.779
Psed_2254
KEGG: nml:Namu_3427 epoxide hydrolase domain-containing protein; PFAM: Epoxide hydrolase, N-terminal; Alpha/beta hydrolase fold-1.
       0.773
Psed_5681
Radical SAM domain protein; KEGG: rha:RHA1_ro06072 coenzyme synthesis protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
 
  
 0.615
Psed_0412
KEGG: pol:Bpro_3892 hypothetical protein; PFAM: Domain of unknown function DUF58; SMART: von Willebrand factor, type A.
 
  
 0.610
Psed_2257
KEGG: rop:ROP_46670 carveol dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.558
Psed_5682
KEGG: nfa:nfa34420 hypothetical protein.
 
    0.540
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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