STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2257KEGG: rop:ROP_46670 carveol dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (280 aa)    
Predicted Functional Partners:
Psed_0219
KEGG: cai:Caci_6492 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.
  
     0.742
Psed_2256
KEGG: nml:Namu_2355 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A.
 
     0.703
Psed_5682
KEGG: nfa:nfa34420 hypothetical protein.
  
   
 0.628
Psed_5681
Radical SAM domain protein; KEGG: rha:RHA1_ro06072 coenzyme synthesis protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
  
   
 0.604
Psed_5495
PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: lwe:lwe2751 3-ketoacyl-(acyl-carrier-protein) reductase; SMART: Polyketide synthase/Fatty acid synthase, KR.
 
     0.578
Psed_2255
ATPase associated with various cellular activities AAA_5; PFAM: ATPase, AAA-5; KEGG: nml:Namu_2354 ATPase.
 
   
 0.559
Psed_3687
Short-chain dehydrogenase/reductase SDR; KEGG: sen:SACE_4323 short chain dehydrogenase/reductase family oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.550
Psed_2258
KEGG: rop:ROP_31020 hypothetical protein.
 
     0.536
Psed_5677
PFAM: Glycosyl transferase, family 2; KEGG: gob:Gobs_4928 family 2 glycosyl transferase.
 
     0.532
Psed_2262
HpcH/HpaI aldolase; PFAM: Aldehyde-lyase domain; KEGG: rop:ROP_33640 putative oxidoreductase/aldolase; Belongs to the HpcH/HpaI aldolase family.
 
   
 0.528
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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