STRINGSTRING
Psed_2296 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2296" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2296Hypothetical protein (155 aa)    
Predicted Functional Partners:
Psed_2297
Hypothetical protein (219 aa)
              0.859
Psed_4278
Metal dependent phosphohydrolase (187 aa)
   
          0.735
Psed_2823
Abortive infection protein (244 aa)
   
          0.706
Psed_2047
Hypothetical protein (330 aa)
   
          0.700
Psed_0668
Hypothetical protein (94 aa)
   
          0.698
Psed_3152
ATP-binding protein (179 aa)
   
          0.665
Psed_1876
O-antigen polymerase (674 aa)
   
          0.597
Psed_0233
Transglycosylase associated protein (90 aa)
   
          0.569
Psed_1593
F420-dependent protein (146 aa)
   
          0.562
Psed_1907
Hypothetical protein (573 aa)
   
          0.557
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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