STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2389KEGG: req:REQ_25930 gas vesicle protein GvpG. (76 aa)    
Predicted Functional Partners:
Psed_2388
PFAM: Gas vesicle protein GvpL/GvpF; KEGG: sen:SACE_0973 gas vesicle synthesis GvpLGvpF.
 
   
 0.964
Psed_2386
Cyclase/dehydrase; PFAM: Streptomyces cyclase/dehydrase; KEGG: rha:RHA1_ro03411 hypothetical protein.
 
     0.960
gvpA
Gas vesicle structural protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
   
 0.954
Psed_2385
KEGG: mjl:Mjls_2373 hypothetical protein.
 
     0.953
Psed_2390
PFAM: Gas vesicle protein GvpO; KEGG: sen:SACE_0971 hypothetical protein.
 
   
 0.945
Psed_2394
PFAM: Gas vesicle protein GvpK; KEGG: msm:MSMEG_5744 gas vesicle protein K.
 
   
 0.943
Psed_2391
Gas vesicle protein GVPa; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
   
 0.939
Psed_2392
PFAM: Gas vesicle protein GvpL/GvpF; KEGG: msm:MSMEG_5746 gas vesicle protein.
 
   
 0.939
Psed_2393
PFAM: Gas vesicle protein GvpA; KEGG: req:REQ_25970 gas vesicle protein.
 
   
 0.939
gvpA-2
Gas vesicle structural protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
   
 0.805
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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