STRINGSTRING
Psed_2398 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2398" - LmbE family protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2398LmbE family protein (411 aa)    
Predicted Functional Partners:
Psed_2397
acyl-CoA dehydrogenase-like protein (340 aa)
        0.970
Psed_2399
Glycosyl transferase protein (269 aa)
 
          0.968
Psed_2334
Glycosyl transferase protein (358 aa)
 
          0.731
Psed_2333
Glycosyltransferase-like protein (283 aa)
 
          0.679
Psed_6295
LmbE family protein (241 aa)
   
        0.559
Psed_3700
LmbE family protein (246 aa)
   
        0.559
Psed_3278
LmbE family protein (268 aa)
   
        0.559
Psed_1895
LmbE family protein (221 aa)
   
        0.559
Psed_1494
LmbE family protein (269 aa)
   
        0.559
mshB
1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase; Catalyzes the deacetylation of 1D-myo-inositol 2- acetamido-2-deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway (291 aa)
   
        0.559
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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