STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2398LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; Methyltransferase type 12; KEGG: ami:Amir_2568 LmbE family protein. (411 aa)    
Predicted Functional Partners:
Psed_2399
KEGG: aau:AAur_3425 glycosyl transferase, group 2 family protein.
  
 0.965
Psed_2397
KEGG: ami:Amir_2567 putative acyl-CoA dehydrogenase-related protein.
     0.940
Psed_0320
KEGG: sgr:SGR_303 hypothetical protein.
  
     0.464
Psed_0744
PFAM: Flavoprotein transmembrane component; KEGG: amd:AMED_5940 hypothetical protein.
  
     0.424
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.