STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2479PFAM: Luciferase-like, subgroup; KEGG: nfa:nfa32900 hypothetical protein. (299 aa)    
Predicted Functional Partners:
Psed_2480
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: swi:Swit_1616 glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.779
Psed_2478
PFAM: Amidohydrolase 2; KEGG: rlt:Rleg2_6338 amidohydrolase 2.
       0.776
Psed_1379
KEGG: mmi:MMAR_1575 oxidoreductase; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted; PFAM: Luciferase-like, subgroup.
  
     0.774
Psed_2481
KEGG: sro:Sros_3030 ABC transporter related protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.
       0.773
Psed_5898
PFAM: Luciferase-like, subgroup; KEGG: kfl:Kfla_6396 luciferase-like monooxygenase.
  
     0.773
Psed_1473
Putative F420-dependent oxidoreductase; KEGG: fra:Francci3_2659 luciferase-like protein; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, MSMEG2516, predicted; PFAM: Luciferase-like, subgroup.
  
     0.763
Psed_4220
PFAM: Luciferase-like, subgroup; KEGG: hje:HacjB3_02270 luciferase-like monooxygenase.
  
     0.763
Psed_5506
PFAM: Luciferase-like, subgroup; KEGG: hsl:OE2918F alkanesulfonate monooxygenase.
  
     0.763
Psed_4570
KEGG: amd:AMED_2163 putative monooxygenase; TIGRFAM: F420-dependent oxidoreductase-predicted, Rv1855c; PFAM: Luciferase-like, subgroup.
  
     0.753
Psed_4041
Putative F420-dependent oxidoreductase; KEGG: rha:RHA1_ro00619 alkanesulfonate monooxygenase; TIGRFAM: F420-dependent oxidoreductase-predicted, Rv1855c; Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted; PFAM: Luciferase-like, subgroup.
  
     0.752
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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