STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2609Transcriptional regulator, TrmB; PFAM: Transcription regulator TrmB, N-terminal; KEGG: sro:Sros_2039 helix-turn-helix family DUF118. (301 aa)    
Predicted Functional Partners:
Psed_2606
KEGG: jan:Jann_2269 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.
 
     0.814
Psed_2608
Succinate dehydrogenase; KEGG: nca:Noca_0203 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal.
  
    0.802
Psed_2605
KEGG: jan:Jann_2271 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.
 
     0.801
Psed_2607
KEGG: amd:AMED_7167 hypothetical protein.
       0.773
Psed_1477
PFAM: Cytochrome P450; KEGG: jan:Jann_2272 cytochrome P450-like.
  
     0.739
Psed_1472
PFAM: Cytochrome P450; KEGG: jan:Jann_2272 cytochrome P450-like.
  
     0.648
Psed_2604
Hypothetical protein.
       0.636
Psed_1471
PFAM: Limonene-1,2-epoxide hydrolase; KEGG: rop:ROP_24950 hypothetical protein.
  
     0.582
Psed_2600
ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: sth:STH802 branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.579
Psed_2601
ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: bxe:Bxe_A2754 branched chain amino acid ABC transporter inner membrane protein; Belongs to the binding-protein-dependent transport system permease family.
       0.579
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.