STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2635KEGG: gob:Gobs_0834 phage SPO1 DNA polymerase-like protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like. (194 aa)    
Predicted Functional Partners:
Psed_0901
PFAM: Uracil-DNA glycosylase-like; KEGG: rop:ROP_60020 putative uracil-DNA glycosylase.
  
  
  0.912
Psed_2634
Glycogen debranching enzyme GlgX; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Glycogen debranching enzyme; KEGG: ace:Acel_1372 glycogen debranching enzyme GlgX; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain; Belongs to the glycosyl hydrolase 13 family.
       0.543
Psed_5365
Universal protein YeaZ; KEGG: ami:Amir_6548 peptidase M22 glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: Peptidase M22, glycoprotease.
  
    0.518
Psed_4808
KEGG: req:REQ_30370 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding.
   
   0.492
Psed_6654
KEGG: amd:AMED_9297 single-strand DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding.
   
   0.492
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
    0.439
Psed_2632
KEGG: nda:Ndas_2013 intracellular protease, PfpI family; TIGRFAM: Peptidase C56, PfpI; PFAM: ThiJ/PfpI.
 
     0.429
Psed_1547
Pyruvate carboxylase; KEGG: rop:ROP_29690 putative carboxyltransferase; PFAM: Carboxylase, conserved domain; Pyruvate carboxyltransferase.
  
    0.414
Psed_3034
KEGG: sti:Sthe_2821 pyruvate carboxylase; PFAM: Carboxylase, conserved domain; Pyruvate carboxyltransferase.
  
    0.414
Psed_0882
Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
    0.401
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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