STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2736KEGG: amd:AMED_1945 hypothetical protein. (226 aa)    
Predicted Functional Partners:
Psed_2735
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_1946 TetR family transcriptional regulator.
 
     0.885
Psed_2737
Pentachlorophenol monooxygenase; KEGG: amd:AMED_1944 FAD-dependent oxidoreductase; PFAM: Monooxygenase, FAD-binding.
       0.773
Psed_2734
Butyryl-CoA dehydrogenase; KEGG: mpt:Mpe_A2676 acetyl-coenzyme A dehydrogenase, medium chain; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1.
       0.526
Psed_2863
PFAM: Trp biosynthesis associated, transmembrane protein, Oprn/Chp; KEGG: cai:Caci_5713 hypothetical protein.
  
     0.438
Psed_3333
KEGG: tbi:Tbis_0296 NLP/P60 protein.
  
     0.425
Psed_1961
KEGG: sen:SACE_1867 hypothetical protein.
  
    0.412
Psed_2904
KEGG: sen:SACE_1862 hypothetical protein.
  
     0.401
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.