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Psed_2940 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2940" - HAD-superfamily hydrolase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2940HAD-superfamily hydrolase (216 aa)    
Predicted Functional Partners:
Psed_3325
HAD-superfamily hydrolase (233 aa)
   
          0.757
Psed_6238
HAD-superfamily hydrolase (260 aa)
   
          0.702
Psed_2939
Acyltransferase (241 aa)
              0.634
Psed_6236
Phosphoglycerate kinase (392 aa)
   
      0.588
Psed_3418
Phosphoglycerate kinase (392 aa)
   
      0.588
Psed_3326
Methionine synthase (1190 aa)
              0.571
Psed_1785
Serine--pyruvate transaminase (372 aa)
   
   
  0.546
Psed_2107
Methionine synthase (603 aa)
         
  0.528
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner (357 aa)
   
 
    0.502
Psed_3146
Kojibiose phosphorylase (786 aa)
   
   
  0.494
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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