STRINGSTRING
Psed_3003 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3003" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3003Hypothetical protein (72 aa)    
Predicted Functional Partners:
Psed_3004
Hypothetical protein (75 aa)
              0.859
Psed_4708
GCN5-like N-acetyltransferase (277 aa)
   
          0.556
Psed_3005
Hypothetical protein (872 aa)
              0.528
Psed_4621
Helix-turn-helix domain-containing protein (123 aa)
   
          0.473
Psed_3410
OpcA protein (317 aa)
   
          0.473
Psed_3002
TetR family transcriptional regulator (141 aa)
              0.471
Psed_2758
Hypothetical protein (182 aa)
   
          0.465
Psed_1093
Cobalamin (vitamin B12) biosynthesis CbiX protein (223 aa)
   
          0.465
Psed_2132
Hypothetical protein (162 aa)
   
          0.462
Psed_4371
Lysyl tRNA synthetase-like protein (127 aa)
   
          0.424
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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