STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3003KEGG: rop:ROP_68040 hypothetical protein. (72 aa)    
Predicted Functional Partners:
Psed_3004
KEGG: ami:Amir_1687 hypothetical protein.
       0.773
Psed_2794
KEGG: msp:Mspyr1_23110 hypothetical protein.
  
     0.543
Psed_3005
KEGG: sen:SACE_3314 putative surface layer protein; TIGRFAM: YVTN beta-propeller repeat; PFAM: Heat shock protein 70.
       0.473
Psed_2132
KEGG: svi:Svir_10250 hypothetical protein.
  
     0.463
Psed_3002
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sna:Snas_0252 transcriptional regulator, TetR family.
       0.425
Psed_2991
KEGG: sen:SACE_1795 type III restriction enzyme, res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal.
 
     0.410
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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