STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3107KEGG: nfa:nfa6330 hypothetical protein. (306 aa)    
Predicted Functional Partners:
Psed_5020
KEGG: mil:ML5_2527 php domain protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal.
  
   
 0.613
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.543
Psed_0882
Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
 
 0.538
Psed_3108
KEGG: sen:SACE_5554 hypothetical protein.
       0.538
Psed_3109
KEGG: amd:AMED_3008 hypothetical protein.
       0.538
Psed_0946
KEGG: sen:SACE_0923 hypothetical protein.
    
 
 0.502
Psed_4881
KEGG: sen:SACE_0923 hypothetical protein.
    
 
 0.502
Psed_1724
PFAM: Protein of unknown function DUF2029; KEGG: rxy:Rxyl_2872 hypothetical protein.
    
 
 0.493
Psed_5390
PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: tpr:Tpau_0863 peptidase S8 and S53 subtilisin kexin sedolisin; Belongs to the peptidase S8 family.
  
 
 0.488
Psed_5654
KEGG: ami:Amir_3551 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Belongs to the peptidase S8 family.
  
 
 0.488
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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