STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3112PFAM: Domain of unknown function DUF1990; KEGG: svi:Svir_21430 hypothetical protein. (253 aa)    
Predicted Functional Partners:
Psed_3113
KEGG: svi:Svir_21420 hypothetical protein.
       0.837
Psed_3111
PFAM: Haemerythrin/HHE cation-binding motif; KEGG: amd:AMED_6576 hypothetical protein.
     
 0.642
Psed_3110
PFAM: Maritimacin/linocin-M18 bacteriocin protein; KEGG: amd:AMED_6577 linocin_M18 bacteriocin protein.
       0.628
Psed_3114
KEGG: sen:SACE_4249 hypothetical protein.
       0.614
Psed_3115
KEGG: rop:ROP_53610 hypothetical protein.
       0.433
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.