STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3189Hypothetical protein; KEGG: ske:Sked_01070 monosaccharide-binding protein. (356 aa)    
Predicted Functional Partners:
Psed_3190
ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: rhi:NGR_c06530 hypothetical ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.992
Psed_3191
Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: req:REQ_19950 abc transporter atpase suunit; SMART: ATPase, AAA+ type, core.
 
 0.988
Psed_2321
KEGG: nca:Noca_0099 ABC-type sugar transport system periplasmic component-like.
  
  
  0.949
Psed_3028
KEGG: nca:Noca_0099 ABC-type sugar transport system periplasmic component-like.
  
  
  0.942
Psed_4172
KEGG: nca:Noca_0099 ABC-type sugar transport system periplasmic component-like.
  
  
  0.917
Psed_0683
KEGG: nca:Noca_0099 ABC-type sugar transport system periplasmic component-like.
  
  
  0.913
Psed_2258
KEGG: rop:ROP_31020 hypothetical protein.
     
  0.900
Psed_2265
KEGG: rop:ROP_31020 hypothetical protein.
     
  0.900
Psed_2259
Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; ABC transporter permease; KEGG: cwo:Cwoe_3938 ABC transporter related protein; SMART: ATPase, AAA+ type, core; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.883
Psed_6430
KEGG: lch:Lcho_4113 multi-sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain.
  
 
 0.883
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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