STRINGSTRING
Psed_3192 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3192" - Flavanone 3-dioxygenase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3192Flavanone 3-dioxygenase (343 aa)    
Predicted Functional Partners:
Psed_3190
ABC transporter permease (366 aa)
              0.860
Psed_3191
Monosaccharide-transporting ATPase (514 aa)
              0.859
Psed_3185
Hypothetical protein (135 aa)
 
          0.631
Psed_3189
Hypothetical protein (356 aa)
              0.622
Psed_3186
Isochorismatase hydrolase (235 aa)
 
        0.612
Psed_3184
Allophanate hydrolase (571 aa)
   
        0.545
Psed_2966
Rieske (2Fe-2S) domain-containing protein (361 aa)
 
          0.530
Psed_3188
Ring-opening amidohydrolase (344 aa)
              0.527
Psed_3187
GntR family transcriptional regulator (249 aa)
              0.527
Psed_3193
Cupin (158 aa)
              0.448
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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