Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_3192Flavanone 3-dioxygenase; KEGG: mpo:Mpop_4351 2OG-Fe(II) oxygenase; PFAM: Oxoglutarate/iron-dependent oxygenase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (343 aa)    
Predicted Functional Partners:
Psed_3190
ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: rhi:NGR_c06530 hypothetical ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.773
Psed_3191
Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: req:REQ_19950 abc transporter atpase suunit; SMART: ATPase, AAA+ type, core.
       0.773
Psed_3189
Hypothetical protein; KEGG: ske:Sked_01070 monosaccharide-binding protein.
       0.554
Psed_3186
PFAM: Isochorismatase-like; KEGG: cai:Caci_6450 isochorismatase hydrolase.
  
    0.475
Psed_3188
Ring-opening amidohydrolase; Responsible for the hydrolysis of cyanuric acid, an intermediate formed during catabolism of s-triazine based compounds in herbicides such as atrazine and polymers such as melamine. Catalyzes the hydrolytic opening of the s-triazine ring of cyanuric acid (2,4,6- trihydroxy-s-triazine) to yield carbon dioxide and carboxybiuret, which spontaneously decarboxylates to biuret.
       0.475
Psed_3185
KEGG: ccs:CCNA_02697 hypothetical protein.
  
    0.473
Psed_3184
TIGRFAM: Allophanate hydrolase; KEGG: sma:SAV_6697 allophanate hydrolase; PFAM: Amidase.
       0.470
Psed_3187
KEGG: fal:FRAAL6172 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.
       0.470
Psed_3193
PFAM: Cupin 2, conserved barrel; KEGG: acr:Acry_0320 cupin 2 domain-containing protein.
       0.451
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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