STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Psed_3205ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: fre:Franean1_4451 binding-protein-dependent transport systems inner membrane component. (571 aa)    
Predicted Functional Partners:
Psed_3204
PFAM: Bacterial extracellular solute-binding, family 1; KEGG: rop:ROP_48590 hypothetical protein.
 
 
 0.986
Psed_3206
Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: fre:Franean1_4452 ABC transporter related; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.
 
 0.984
Psed_6640
PFAM: Bacterial extracellular solute-binding, family 1; KEGG: saq:Sare_1431 extracellular solute-binding protein.
 
 
 0.962
Psed_6642
Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: saq:Sare_1429 ABC transporter related; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.
 
 0.958
Psed_6641
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: mva:Mvan_3092 binding-protein-dependent transport systems inner membrane component.
  
  
 
0.924
Psed_5655
Molybdate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 1; KEGG: sen:SACE_0573 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.
 
 
 0.710
Psed_3207
KEGG: rce:RC1_3257 alpha-methylacyl-CoA racemase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.
     
 0.573
Psed_1052
Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; KEGG: ami:Amir_0810 ABC transporter related; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.
 
   
 0.487
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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