STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3207KEGG: rce:RC1_3257 alpha-methylacyl-CoA racemase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family. (396 aa)    
Predicted Functional Partners:
Psed_2922
o-succinylbenzoate--CoA ligase; KEGG: eli:ELI_02000 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase.
    
 0.902
Psed_3206
Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: fre:Franean1_4452 ABC transporter related; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.
       0.774
Psed_3205
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: fre:Franean1_4451 binding-protein-dependent transport systems inner membrane component.
     
 0.573
Psed_3204
PFAM: Bacterial extracellular solute-binding, family 1; KEGG: rop:ROP_48590 hypothetical protein.
       0.411
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.