STRINGSTRING
Psed_3207 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3207" - alpha-methylacyl-CoA racemase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3207alpha-methylacyl-CoA racemase (396 aa)    
Predicted Functional Partners:
Psed_3206
Polyamine-transporting ATPase (380 aa)
              0.859
Psed_0649
3-hydroxybutyryl-CoA epimerase (720 aa)
   
   
  0.699
Psed_3205
ABC transporter permease (571 aa)
              0.634
Psed_3998
long-chain-acyl-CoA dehydrogenase (383 aa)
 
   
  0.585
Psed_6207
butyryl-CoA dehydrogenase (387 aa)
   
   
  0.518
Psed_6155
butyryl-CoA dehydrogenase (382 aa)
   
   
  0.518
Psed_5235
butyryl-CoA dehydrogenase (383 aa)
   
   
  0.518
Psed_4543
butyryl-CoA dehydrogenase (385 aa)
   
   
  0.518
Psed_4112
butyryl-CoA dehydrogenase (383 aa)
   
   
  0.518
Psed_3670
butyryl-CoA dehydrogenase (384 aa)
   
   
  0.518
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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