STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3212Formyl-CoA transferase; KEGG: mav:MAV_4237 YfdE protein; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family. (386 aa)    
Predicted Functional Partners:
Psed_3210
KEGG: rer:RER_07930 hypothetical protein.
  
  
 0.783
Psed_3213
PFAM: Crotonase, core; KEGG: fal:FRAAL3799 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.783
Psed_3211
PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: rer:RER_07920 hypothetical protein.
       0.779
Psed_3208
KEGG: axy:AXYL_05906 CoA-transferase family III family protein 46; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.
 
    
0.570
Psed_3209
KEGG: chy:CHY_1745 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal.
       0.570
Psed_4906
KEGG: rop:ROP_70910 hypothetical protein; Belongs to the CoA-transferase III family.
  
     0.433
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.